class: center, middle ## Writing reproducible & executable scientific papers with R & Python <img src="logo-name.svg" width="300" /> #### eScience Institute, University of Washington #### 11 June 2019 <div> <a href="https://twitter.com/stencila">@stencila</a> </div> <p style="position: absolute; bottom: 10px; font-size: 10px">Press <code>P</code> to switch to presenter mode</p> --- class: center, middle Slides available at `https://github.com/stencila/slides` In `2019-06-11-uw-workshop`. --- ### Agenda - **Setup and Installation** - **Stencila CLI Tool Tutorial** - **Stencila Hub Tutorial** - **Bonus: More Stencila converter features** - **Bonus: Stencila Texture+ Editor (used for eLife)** --- ### Stencila CLI  --- ### Stencila Hub  --- ### Setup and Installation - [Download Stencila CLI](https://github.com/stencila/stencila#install) - [Install Jupyter Notebook](https://jupyter.readthedocs.io/en/latest/install.html) - [Download examples (`escience-ws-11-june` branch)](https://github.com/stencila/examples/tree/escience-ws-june-11/) --- class: center, middle ### Navigate to `examples/escience-ws-11-june` --- class: center, middle ### Stencila CLI Tool Demo [](https://asciinema.org/a/MGhcJ4OYtxvNU2fJ5M4uhQgfX) --- class: center, middle ### Stencila Hub Tutorial --- class: center, middle ### Step 1: Open Stencila Hub [https://hub.stenci.la/](https://hub.stenci.la/) **Beta token:** `kangaroo` --- class: center, middle ### Step 2: Create an account on the Hub. Sign in using Google or Github. --- class: center, middle ### Step 3: Create a project. Navigate to the project files. --- class: center, middle ### Step 4: Add some files to the project Create a folder, a new file, or upload a file. --- class: center, middle ### Step 5: Link Google account, Github account (if you haven't already). --- class: center, middle ### Step 6: Add a Github repository for testing. Repo: `corinalogan/grackles` Folder: `EasyToReadFiles` --- class: center, middle ### Step 7: Save a Markdown file as a Google Doc. --- class: center, middle ### Step 8: Open the converted Google Doc file. --- class: center, middle ### Step 9: Collaborate on Google Doc Leave a comment. Share with another user. Make edits. --- class: center, middle ### Step 10: Return to Stencila Hub. Close the Google Document, and return to your project files. --- class: center, middle ### Step 11: Save the Google Doc as a Markdown file. --- class: center, middle ### Step 12: Share your project Share your project with another user. Make it public. --- class: center, middle ### Thank you! --- class: center, middle ### Bonus: More Stencila converter features --- class: center, middle ### Bonus: Stencila Texture+ Editor (used for eLife) --- ### Workshop Feedback Questionnaire Please fill out our [workshop feedback questionnaire](https://forms.gle/DRqsHbYNSTBP2tcH9). Thank you! --- ### Help wanted! You can help by: - 📬 Sign up to [become a Stencila Hub Beta Tester](https://forms.gle/s1zbDL3fEdcyW5Zf6)